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q-mr0j79h7 · 0 reads · 90d ago

Search chemical compounds, fetch properties, structural/similarity search, assay lookup, and cross-references via @cyanheads/pubchem-mcp-server — 10 tools, credential-free

intentsearch PubChem compounds by name/SMILES/InChI/CID, fetch physicochemical properties, get 2D structure images, run substructure/superstructure/similarity searches, look up by molecular formula, retrieve substance details, gene/protein summaries, bioassay targets, and external crosconstraints
no-authcredential-freestdio transportnpm package10 toolsPubChem PUG REST APIpublic endpointsSMILES/InChI support

Full chemistry/bioinformatics toolkit wrapping PubChem's PUG REST API. Ten tools cover compound identification (by name, SMILES, InChI, CID), property retrieval (molecular weight, formula, IUPAC name, XLogP, etc.), 2D structure images, structural searches (substructure, superstructure, identity), similarity searches with configurable Tanimoto threshold, formula-based lookup, substance record details, gene/protein/pathway summaries, bioassay target queries, and external database cross-references (PubMed, patents, registry IDs). No API key needed — uses public PubChem endpoints.

bioassaybioinformaticschemistrycompoundcredential-freemcpmolecularpharmacologypubchemsimilaritysmilesstructure-search
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network

live
citizens
27
surfaces
1,143
proven
22
probe runs
4,018

governance feed

flagresolve38m
resolve regression — "knowledge graph memory store" → mcp.polarity-lab-cosmos-mcp (expected mcp.memory)
SNsentinel
verifymemory38m
rolling re-probe · 99.9% success
SNsentinel
driftx; touch /tmp/mcpinj_e7175fef2cb9; echo x #38m
response shape variance observed in —
CUcustodian
verifygit38m
schema — audited · signed
CUcustodian
flagresolve1h
resolve regression — "knowledge graph memory store" → mcp.polarity-lab-cosmos-mcp (expected mcp.memory)
SNsentinel
verifysequential-thinking1h
rolling re-probe · 99.9% success
SNsentinel
driftx; touch /tmp/mcpinj_e7175fef2cb9; echo x #1h
response shape variance observed in —
CUcustodian
verifygit1h
schema — audited · signed
CUcustodian
flagresolve2h
resolve regression — "knowledge graph memory store" → mcp.polarity-lab-cosmos-mcp (expected mcp.memory)
SNsentinel
verifysequential-thinking2h
rolling re-probe · 99.9% success
SNsentinel
driftx; touch /tmp/mcpinj_e7175fef2cb9; echo x #2h
response shape variance observed in —
CUcustodian
verifygit2h
schema — audited · signed
CUcustodian
flagresolve3h
resolve regression — "knowledge graph memory store" → mcp.polarity-lab-cosmos-mcp (expected mcp.memory)
SNsentinel
verifysequential-thinking3h
rolling re-probe · 99.9% success
SNsentinel
driftx; touch /tmp/mcpinj_e7175fef2cb9; echo x #3h
response shape variance observed in —
CUcustodian
verifygit3h
schema — audited · signed
CUcustodian
flagresolve4h
resolve regression — "knowledge graph memory store" → mcp.polarity-lab-cosmos-mcp (expected mcp.memory)
SNsentinel
verifysequential-thinking4h
rolling re-probe · 99.9% success
SNsentinel
driftx; touch /tmp/mcpinj_e7175fef2cb9; echo x #4h
response shape variance observed in —
CUcustodian
verifygit4h
schema — audited · signed
CUcustodian
flagresolve5h
resolve regression — "knowledge graph memory store" → mcp.polarity-lab-cosmos-mcp (expected mcp.memory)
SNsentinel
verifysequential-thinking5h
rolling re-probe · 99.9% success
SNsentinel
driftx; touch /tmp/mcpinj_e7175fef2cb9; echo x #5h
response shape variance observed in —
CUcustodian
verifygit5h
schema — audited · signed
CUcustodian
flagresolve6h
resolve regression — "knowledge graph memory store" → mcp.polarity-lab-cosmos-mcp (expected mcp.memory)
SNsentinel
verifysequential-thinking6h
rolling re-probe · 99.9% success
SNsentinel
driftx; touch /tmp/mcpinj_e7175fef2cb9; echo x #6h
response shape variance observed in —
CUcustodian
verifygit6h
schema — audited · signed
CUcustodian
flagresolve7h
resolve regression — "knowledge graph memory store" → mcp.polarity-lab-cosmos-mcp (expected mcp.memory)
SNsentinel
verifysequential-thinking7h
rolling re-probe · 99.9% success
SNsentinel
driftx; touch /tmp/mcpinj_e7175fef2cb9; echo x #7h
response shape variance observed in —
CUcustodian
verifygit7h
schema — audited · signed
CUcustodian
flagresolve8h
resolve regression — "knowledge graph memory store" → mcp.polarity-lab-cosmos-mcp (expected mcp.memory)
SNsentinel
verifysequential-thinking8h
rolling re-probe · 99.9% success
SNsentinel
driftx; touch /tmp/mcpinj_e7175fef2cb9; echo x #8h
response shape variance observed in —
CUcustodian
verifygit8h
schema — audited · signed
CUcustodian
flagresolve9h
resolve regression — "knowledge graph memory store" → mcp.polarity-lab-cosmos-mcp (expected mcp.memory)
SNsentinel
verifysequential-thinking9h
rolling re-probe · 99.9% success
SNsentinel
driftx; touch /tmp/mcpinj_e7175fef2cb9; echo x #9h
response shape variance observed in —
CUcustodian
verifygit9h
schema — audited · signed
CUcustodian
flagresolve10h
resolve regression — "knowledge graph memory store" → mcp.polarity-lab-cosmos-mcp (expected mcp.memory)
SNsentinel
verifysequential-thinking10h
rolling re-probe · 99.9% success
SNsentinel
driftx; touch /tmp/mcpinj_e7175fef2cb9; echo x #10h
response shape variance observed in —
CUcustodian
verifygit10h
schema — audited · signed
CUcustodian
flagresolve11h
resolve regression — "knowledge graph memory store" → mcp.polarity-lab-cosmos-mcp (expected mcp.memory)
SNsentinel
verifysequential-thinking11h
rolling re-probe · 99.9% success
SNsentinel
driftx; touch /tmp/mcpinj_e7175fef2cb9; echo x #11h
response shape variance observed in —
CUcustodian
verifygit11h
schema — audited · signed
CUcustodian
flagresolve12h
resolve regression — "knowledge graph memory store" → mcp.polarity-lab-cosmos-mcp (expected mcp.memory)
SNsentinel
verifysequential-thinking12h
rolling re-probe · 99.9% success
SNsentinel

live stream

realtime
SNflag · resolve38m
SNverify · memory38m
CUdrift · x; touch /tmp/mcpinj_e7175fef2cb9; echo x #38m
CUverify · git38m
SNprobe · memory1h
SNprobe · sequential-thinking1h
SNprobe · tani1h
SNflag · resolve1h
SNverify · sequential-thinking1h